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1

Epidemiology of severe sepsis in the United States: Analysis of incidence, outcome, and associated costs of care

Angus, Derek C., Linde-Zwirble, Walter T., Lidicker, Jeffrey, Clermont, Gilles, Carcillo, Joseph, Pinsky, Michael R.

Journal:

Critical Care Medicine

Year:

2001

Language:

english

File:

PDF, 108 KB

english, 2001

2

Renal failure in the ICU: Comparison of the impact of acute renal failure and end-stage renal disease on ICU outcomes

Clermont, Gilles, Acker, Christopher G., Angus, Derek C., Sirio, Carl A., Pinsky, Michael R., Johnson, John P.

Journal:

Kidney International

Year:

2002

Language:

english

File:

PDF, 609 KB

english, 2002

3

The inverse problem in mathematical biology

Clermont, Gilles, Zenker, Sven

Journal:

Mathematical Biosciences

Year:

2015

Language:

english

File:

PDF, 274 KB

english, 2015

4

Real alerts and artifact classification in archived multi-signal vital sign monitoring data: implications for mining big data

Hravnak, Marilyn, Chen, Lujie, Dubrawski, Artur, Bose, Eliezer, Clermont, Gilles, Pinsky, Michael R.

Journal:

Journal of Clinical Monitoring and Computing

Year:

2016

Language:

english

File:

PDF, 2.00 MB

english, 2016

5

APT-MCMC, a C++/Python implementation of Markov Chain Monte Carlo for Parameter Identification

Zhang, Li Ang, Urbano, Alisa, Clermont, Gilles, Swigon, David, Banerjee, Ipsita, Parker, Robert S.

Journal:

Computers & Chemical Engineering

Year:

2017

Language:

english

File:

PDF, 9.22 MB

english, 2017

6

A call to alarms: Current state and future directions in the battle against alarm fatigue

Hravnak, Marilyn, Pellathy, Tiffany, Chen, Lujie, Dubrawski, Artur, Wertz, Anthony, Clermont, Gilles, Pinsky, Michael R.

Journal:

Journal of Electrocardiology

Year:

2018

Language:

english

File:

PDF, 924 KB

english, 2018

7

A reduced mathematical model of the acute inflammatory response II. Capturing scenarios of repeated endotoxin administration

Judy Day, Jonathan Rubin, Yoram Vodovotz, Carson C. Chow, Angela Reynolds, Gilles Clermont

Journal:

Journal of Theoretical Biology

Year:

2006

Language:

english

File:

PDF, 1.27 MB

english, 2006

8

Dynamic microsimulation to model multiple outcomes in cohorts of critically ill patients

Gilles Clermont, Vladimir Kaplan, Rui Moreno, Jean-Louis Vincent, Walter T. Linde-Zwirble, Ben Van Hout, Derek C. Angus

Journal:

Intensive Care Medicine

Year:

2004

Language:

english

File:

PDF, 171 KB

english, 2004

9

Outlier detection for patient monitoring and alerting

Hauskrecht, Milos, Batal, Iyad, Valko, Michal, Visweswaran, Shyam, Cooper, Gregory F., Clermont, Gilles

Journal:

Journal of Biomedical Informatics

Year:

2013

Language:

english

File:

PDF, 723 KB

english, 2013

10

[IEEE 2012 Winter Simulation Conference - (WSC 2012) - Berlin, Germany (2012.12.9-2012.12.12)] Proceedings Title: Proceedings of the 2012 Winter Simulation Conference (WSC) - The case against utilization: Deceptive performance measures in inpatient care capacity models

Luangkesorn, K Louis, Bountourelis, Theologos, Schaefer, Andrew, Nabors, Spencer, Clermont, Gilles

Year:

2012

Language:

english

File:

PDF, 342 KB

english, 2012

11

The Epidemiology of Severe Sepsis in Children in the United States

Watson, R. Scott, Carcillo, Joseph A., Linde-Zwirble, Walter T., Clermont, Gilles, Lidicker, Jeffrey, Angus, Derek C.

Journal:

American Journal of Respiratory and Critical Care Medicine

Year:

2003

Language:

english

File:

PDF, 106 KB

english, 2003

12

From Inverse Problems in Mathematical Physiology to Quantitative Differential Diagnoses

Zenker, Sven, Rubin, Jonathan, Clermont, Gilles

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 804 KB

english, 2007

13

Intensive Monitoring of Urine Output is Associated with Increased Detection of Acute Kidney Injury and Improved Outcomes

Jin, Kui, Murugan, Raghavan, Sileanu, Florentina E., Foldes, Emily, Priyanka, Priyanka, Clermont, Gilles, Kellum, John A.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.21 MB

english, 2017

14

Modeling Fluid Volume and Creatinine Dynamics during Acute Kidney Injury and Edema

Richards, Evan, Clermont, Gilles, Parker, Robert S.

Journal:

IFAC-PapersOnLine

Year:

2017

Language:

english

File:

PDF, 788 KB

english, 2017

15

Predicting neurological recovery with Canonical Autocorrelation Embeddings

De-Arteaga, Maria, Chen, Jieshi, Huggins, Peter, Elmer, Jonathan, Clermont, Gilles, Dubrawski, Artur, Hu, Xiao

Journal:

Year:

2019

Language:

english

File:

PDF, 1.75 MB

english, 2019

16

Derivation, Validation, and Potential Treatment Implications of Novel Clinical Phenotypes for Sepsis

Seymour, Christopher W., Kennedy, Jason N., Wang, Shu, Chang, Chung-Chou H., Elliott, Corrine F., Xu, Zhongying, Berry, Scott, Clermont, Gilles, Cooper, Gregory, Gomez, Hernando, Huang, David T., Kell

Journal:

Year:

2019

Language:

english

File:

PDF, 988 KB

english, 2019

17

A reduced mathematical model of the acute inflammatory response: I. Derivation of model and analysis of anti-inflammation

Angela Reynolds, Jonathan Rubin, Gilles Clermont, Judy Day, Yoram Vodovotz, G. Bard Ermentrout

Journal:

Journal of Theoretical Biology

Year:

2006

Language:

english

File:

PDF, 691 KB

english, 2006

18

A dynamical model of human immune response to influenza A virus infection

Baris Hancioglu, David Swigon, Gilles Clermont

Journal:

Journal of Theoretical Biology

Year:

2007

Language:

english

File:

PDF, 624 KB

english, 2007

19

An ensemble of models of the acute inflammatory response to bacterial lipopolysaccharide in rats: Results from parameter space reduction

Silvia Daun, Jonathan Rubin, Yoram Vodovotz, Anirban Roy, Robert Parker, Gilles Clermont

Journal:

Journal of Theoretical Biology

Year:

2008

Language:

english

File:

PDF, 1.13 MB

english, 2008

20

A mathematical model of pulmonary gas exchange under inflammatory stress

Angela Reynolds, G. Bard Ermentrout, Gilles Clermont

Journal:

Journal of Theoretical Biology

Year:

2010

Language:

english

File:

PDF, 1.14 MB

english, 2010

21

A linear code parameter search algorithm with applications to immunology

Gregory M. Constantine, John Bartels, Carson C. Chow, Gilles Clermont, Yoram Vodovotz

Journal:

Computational Optimization and Applications

Year:

2009

Language:

english

File:

PDF, 297 KB

english, 2009

22

Evaluating Disorders with a Complex Genetics Basis. The Future Roles of Meta-analysis and Systems Biology

David C. Whitcomb, Elie Aoun, Yoram Vodovotz, Gilles Clermont, M. Michael Barmada

Journal:

Digestive Diseases and Sciences

Year:

2005

Language:

english

File:

PDF, 296 KB

english, 2005

23

Epithelial growth factor receptor (EGFR) pathway and renal cell carcinoma

Alain Ravaud, Henri de Clermont, Gilles Pasticier, Denis Smith, Véronique Vendrely, Jean Philippe Maire

Journal:

Targeted Oncology

Year:

2007

Language:

english

File:

PDF, 136 KB

english, 2007

24

The dynamics of acute inflammation

Rukmini Kumar, Gilles Clermont, Yoram Vodovotz, Carson C. Chow

Journal:

Journal of Theoretical Biology

Year:

2004

Language:

english

File:

PDF, 411 KB

english, 2004

25

Medical emergency teams: a strategy for improving patient care and nursing work environments

Sanjay Galhotra, Carol C. Scholle, Mary Amanda Dew, Nicolette C. Mininni, Gilles Clermont, Michael A. DeVita

Journal:

Journal of Advanced Nursing

Year:

2006

Language:

english

File:

PDF, 124 KB

english, 2006

26

Agent-based model of inflammation and wound healing: insights into diabetic foot ulcer pathology and the role of transforming growth factor-β1

Qi Mi, Beatrice Rivière, Gilles Clermont, David L. Steed, Yoram Vodovotz

Journal:

Wound Repair and Regeneration

Year:

2007

Language:

english

File:

PDF, 299 KB

english, 2007

27

Systems biology and translational research

Gilles Clermont, E.A.M Neugebauer

Journal:

Journal of Critical Care

Year:

2005

Language:

english

File:

PDF, 57 KB

english, 2005

28

Toward a framework for evidence-based modeling

Gilles Clermont

Journal:

Journal of Critical Care

Year:

2006

Language:

english

File:

PDF, 50 KB

english, 2006

29

A multiscale lung model of gas exchange under inflammatory stress

Angela Reynolds, G. Bard Ermentrout, Gilles Clermont

Journal:

Journal of Critical Care

Year:

2007

Language:

english

File:

PDF, 183 KB

english, 2007

30

Challenges and rewards on the road to translational systems biology in acute illness: four case reports from interdisciplinary teams

Gary An, C. Anthony Hunt, Gilles Clermont, Edmund Neugebauer, Yoram Vodovotz

Journal:

Journal of Critical Care

Year:

2007

Language:

english

File:

PDF, 284 KB

english, 2007

31

Evidence-based modeling of critical illness: an initial consensus from the Society for Complexity in Acute Illness

Yoram Vodovotz, Gilles Clermont, C. Anthony Hunt, Rolf Lefering, John Bartels, Ruediger Seydel, John Hotchkiss, Shlomo Ta'asan, Edmund Neugebauer, Gary An

Journal:

Journal of Critical Care

Year:

2007

Language:

english

File:

PDF, 129 KB

english, 2007

32

Toward differential diagnosis of critical illness using mechanistic mathematical models: First application to clinical data

Sven Zenker, Jonathan Rubin, Gilles Clermont

Journal:

Journal of Critical Care

Year:

2007

Language:

english

File:

PDF, 70 KB

english, 2007

33

Ensemble models for human immune response to influenza A virus infection

Baris Hancioglu, Gilles Clermont, David Swigon

Journal:

Journal of Critical Care

Year:

2007

Language:

english

File:

PDF, 270 KB

english, 2007

34

Using nonlinear model predictive control to optimize inflammation-modulating therapy

Judy Day, Jonathan Rubin, Yoram Vodovotz, Carson Chow, Gilles Clermont

Journal:

Journal of Critical Care

Year:

2007

Language:

english

File:

PDF, 73 KB

english, 2007

35

Parameter identifiability in a model of the acute inflammatory response

Silvia Daun, Robert Parker, Anirban Roy, Jonathan Rubin, Gilles Clermont

Journal:

Journal of Critical Care

Year:

2007

Language:

english

File:

PDF, 68 KB

english, 2007

36

A closed loop model of pulmonary gas exchange

Angela Reynolds, Gilles Clermont, G. Bard Ermentrout

Journal:

Journal of Critical Care

Year:

2008

Language:

english

File:

PDF, 44 KB

english, 2008

37

Immune response to influenza A

Ian Price, David Swigon, Bard Ermentrout, Ted Ross, Franklin Toapanta, Gilles Clermont

Journal:

Journal of Critical Care

Year:

2008

Language:

english

File:

PDF, 44 KB

english, 2008

38

Equation-based models of dynamic biological systems

Silvia Daun, Jonathan Rubin, Yoram Vodovotz, Gilles Clermont

Journal:

Journal of Critical Care

Year:

2008

Language:

english

File:

PDF, 357 KB

english, 2008

39

Agent-based model of lung inflammation

Bryan Brown, Ian Price, Yungchien Chu, Nagarjun Konduru, Gilles Clermont, Yoram Vodovotz

Journal:

Journal of Critical Care

Year:

2008

Language:

english

File:

PDF, 92 KB

english, 2008

40

Unbiased inference of parameter distributions for nonlinear models: The underdetermined case

Sven Zenker, Jonathan Rubin, Gilles Clermont

Journal:

Journal of Critical Care

Year:

2008

Language:

english

File:

PDF, 79 KB

english, 2008

41

Optimizing hemadsorption therapy with model predictive control

Justin Hogg, Gilles Clermont, John Kellum, Robert Parker

Journal:

Journal of Critical Care

Year:

2008

Language:

english

File:

PDF, 37 KB

english, 2008

42

A compartmental model reveals a mechanism for misregulation of neutrophil trafficking in sepsis

Justin S. Hogg, James R. Faeder, Robert S. Parker, Gilles Clermont

Journal:

Journal of Critical Care

Year:

2009

Language:

english

File:

PDF, 187 KB

english, 2009

43

Immune response to influenza A

Ian Price, David Swigon, Bard Ermentrout, Frank Toapanta, Ted Ross, Gilles Clermont

Journal:

Journal of Critical Care

Year:

2009

Language:

english

File:

PDF, 45 KB

english, 2009

44

A multi-reservoir model of influenza evolution

David W. Dreisigmeyer, Roni Rosenfeld, Jay V. DePasse, Elodie Ghedin, Ian Price, Gilles Clermont

Journal:

Journal of Critical Care

Year:

2009

Language:

english

File:

PDF, 59 KB

english, 2009

45

Spatial effects of pro- and anti-inflammatory cytokines on chronic inflammation: A mathematical model

Ian Price, David Swigon, G Bard Ermentrout, Gilles Clermont

Journal:

Journal of Critical Care

Year:

2011

Language:

english

File:

PDF, 43 KB

english, 2011

46

Using nonlinear model predictive control to find optimal therapeutic strategies to modulate inflammation

Judy Day, Jonathan Rubin, Gilles Clermont

Journal:

Journal of Critical Care

Year:

2011

Language:

english

File:

PDF, 40 KB

english, 2011

47

Parameter estimation and synthesis for systems biology: New algorithms for nonlinear and stochastic models

Sumit Jha, Alexandre Donze, Rupinder Khandpur, Joyeeta Dutta-Moscato, Qi Mi, Yoram Vodovotz, Gilles Clermont, Christopher Langmead

Journal:

Journal of Critical Care

Year:

2011

Language:

english

File:

PDF, 43 KB

english, 2011

48

Real-time optimization of cytokine-selective hemoadsorption devices for treatment of acute inflammation

Justin S. Hogg, Gilles Clermont, Robert S. Parker

Journal:

Journal of Critical Care

Year:

2011

Language:

english

File:

PDF, 39 KB

english, 2011

49

Linking population-level and host-level models of influenza A virus

Sarah Lukens, Jay V. DePasse, David Swigon, Danielle Miller, Roni Rosenfield, Elodie Ghedin, Gilles Clermont

Journal:

Journal of Critical Care

Year:

2012

Language:

english

File:

PDF, 49 KB

english, 2012

50

Understanding pathophysiologic mechanisms in severe sepsis using an ensemble of neutrophil kinetic based systemic inflammation model

Sang Ok Song, Robert Parker, Gilles Clermont

Journal:

Journal of Critical Care

Year:

2012

Language:

english

File:

PDF, 46 KB

english, 2012

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